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This is a common misconception that you need to connect the Eclipse debugger to a running application server once it is started. Part of the job of the MyEclipse connectors when starting up the application servers is to hook the debugger directly into the application server, so all you need to do after the server is started is start setting break points then exercising your application to hit them. This is all covered in our online or in-product help here: http://docs.myeclipseide.com/topic/com.genuitec.myeclipse.doc/html/quickstarts/appservers/index.html?cp=1_9_2_3
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